Taken from Wikipedia:
Cryptosporidium has a spore phase (oocyst) and in this state it can survive for lengthy periods outside a host. It can also resist many common disinfectants, notably chlorine based disinfectants.[3] As a result of this resistance, water purification to eliminate Cryptosporidium generally relies upon coagulation followed by filtration or boiling. Recently, it has been discovered that Cryptosporidium is sensitive to ultraviolet light and ozonation, and water treatments based on these sterilization methods are being developed.[4][5]
Most treatment plants that take raw water from rivers, lakes, and reservoirs for public drinking water production use conventional filtration technologies. This involves a series of processes including coagulation, flocculation, sedimentation, and filtration. Direct filtration, which is typically used to treat water with low particulate levels, includes coagulation and filtration but not sedimentation. Other common filtration processes are slow sand, diatomaceous earth filter, membranes, and bag and cartridge filters. Conventional, direct, slow sand and diatomaceous earth technologies will remove 99% of Cryptosporidium.[6] Membranes and bag and cartridge filters remove Cryptosporidium on a product-specific basis. With the proper concentrations and contact time, Cryptosporidium inactivation will occur with chlorine dioxide and ozone treatment. Additionally, ultraviolet light treatment at relatively low doses will inactivate Cryptosporidium.