I  recently  heard a radio programme about  shipping. They  claimed that  presently world wide shipping was responsible for 3% of CO2 pollution. Most  heavy  ships use heavy oil (  almost  like tar) as their fuel. Is the dregs that  remain from the refining  processes of other  lighter  fuels.
There is a concern that as world transport  moves away  from the traditional Petrol and diesel fuels there  will be less refining  and possibly the availability  of heavy oil will decrease,  which  could affect  world wide shipping.
Some shipping  lines have been researching alternatives.  Whist Batteries and electric motors may well suit short hop routes like ferries,  other present day  fuels are too refined and expensive and would put  costs up  astronomically.
As has been suggested else where "What  about  Hydrogen?"  The storage problems relating to the volume of storage necessary  to provide motive power for large cargo ship was estimated to use up to  a third of the cargo capacity, which presents both  engineering and economic challenges.
But someone has spotted that a lot  of hydrogen we produce these days is converted into ammonia (NH3),  which is hydrogen rich by density.  Its considerably easier to  contain and compress or cool down to a liquid phase(-33C) than pure hydrogen.
Engineers are working  on an engine that can burn ammonia,  and there is a growing expectation that it could be the beginnings of an alternative low carbon propulsion system.
Its not  without  its downsides though.  There are several  significant  hazardous issues,  any  leaks of Ammonia in habitation  areas or work  spaces pose sever risks to humans or other animals.
Spills of ammonia will over time dilute in sea water,  but whilst there is even only low concentrations it is fatal to marine life.
In most practical internal combustion engines (ICEs), burning  Ammonia will usually form nitrogen oxides (NOx), nitric oxide (NO), nitrogen dioxide (NO2), and nitrous oxide (N2O).
We also  have to consider how the  majority of Ammonia is presently  produced through  a process called the "Haber–Bosch process in which nitrogen (N2) and hydrogen (H2) react at high pressure (80 to 300 atm) and high temperature (300 to 500 °C) in the presence of a catalyst (usually magnetic iron oxide, Fe3O4) to form ammonia: N2 + 3H2→ 2NH3 (2)." (Wickipedia)
This is highly energy dependant  process which usually used Hydrogen derived from Steam Reforming which has also a high energy dependant process. 
This is still a research project, and from these brief checks it still seems to have a lot of awkward dilemmas to resolve before it  as any chance of becoming  a commercially viable scheme, But the teams are still working on it so who knows what new low cost manufacturing schemes they may come up with.